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1.
Lipoarabinomannan modification as a source of phenotypic heterogeneity in host-adapted Mycobacterium abscessus isolates.
Proc Natl Acad Sci U S A
; 121(17): e2403206121, 2024 Apr 23.
Article
in English
| MEDLINE | ID: mdl-38630725
2.
Computational analyses of drug resistance mutations in katG and emb complexes in Mycobacterium tuberculosis.
Proteins
; 2024 Mar 14.
Article
in English
| MEDLINE | ID: mdl-38483037
3.
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
Nucleic Acids Res
; 48(D1): D314-D319, 2020 01 08.
Article
in English
| MEDLINE | ID: mdl-31733063
4.
The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver.
Nucleic Acids Res
; 47(D1): D490-D494, 2019 01 08.
Article
in English
| MEDLINE | ID: mdl-30445555
5.
SDM: a server for predicting effects of mutations on protein stability.
Nucleic Acids Res
; 45(W1): W229-W235, 2017 07 03.
Article
in English
| MEDLINE | ID: mdl-28525590
6.
Genomes, structural biology and drug discovery: combating the impacts of mutations in genetic disease and antibiotic resistance.
Biochem Soc Trans
; 45(2): 303-311, 2017 04 15.
Article
in English
| MEDLINE | ID: mdl-28408471
7.
Combined approaches to flexible fitting and assessment in virus capsids undergoing conformational change.
J Struct Biol
; 185(3): 427-39, 2014 Mar.
Article
in English
| MEDLINE | ID: mdl-24333899
8.
RIBFIND: a web server for identifying rigid bodies in protein structures and to aid flexible fitting into cryo EM maps.
Bioinformatics
; 28(18): 2391-3, 2012 Sep 15.
Article
in English
| MEDLINE | ID: mdl-22796953
9.
In silico analyses of isoniazid and streptomycin resistance-associated mutations in Mycobacterium tuberculosis.
Comput Struct Biotechnol J
; 21: 1874-1884, 2023.
Article
in English
| MEDLINE | ID: mdl-36915381
10.
Mutational spectra are associated with bacterial niche.
Nat Commun
; 14(1): 7091, 2023 11 04.
Article
in English
| MEDLINE | ID: mdl-37925514
11.
Hypothesis-free phenotype prediction within a genetics-first framework.
Nat Commun
; 14(1): 919, 2023 02 17.
Article
in English
| MEDLINE | ID: mdl-36808136
12.
PAXX binding to the NHEJ machinery explains functional redundancy with XLF.
Sci Adv
; 9(22): eadg2834, 2023 06 02.
Article
in English
| MEDLINE | ID: mdl-37256950
13.
Finding rigid bodies in protein structures: Application to flexible fitting into cryoEM maps.
J Struct Biol
; 177(2): 520-31, 2012 Feb.
Article
in English
| MEDLINE | ID: mdl-22079400
14.
Prediction of impacts of mutations on protein structure and interactions: SDM, a statistical approach, and mCSM, using machine learning.
Protein Sci
; 29(1): 247-257, 2020 01.
Article
in English
| MEDLINE | ID: mdl-31693276
15.
The Genome3D Consortium for Structural Annotations of Selected Model Organisms.
Methods Mol Biol
; 2165: 27-67, 2020.
Article
in English
| MEDLINE | ID: mdl-32621218
16.
Editorial: Computational Approaches to Study the Impact of Mutations on Disease and Drug Resistance.
Front Mol Biosci
; 8: 813552, 2021.
Article
in English
| MEDLINE | ID: mdl-34957223
17.
γ-TEMPy: Simultaneous Fitting of Components in 3D-EM Maps of Their Assembly Using a Genetic Algorithm.
Structure
; 23(12): 2365-2376, 2015 Dec 01.
Article
in English
| MEDLINE | ID: mdl-26655474
18.
TEMPy: a Python library for assessment of three-dimensional electron microscopy density fits.
J Appl Crystallogr
; 48(Pt 4): 1314-1323, 2015 Aug 01.
Article
in English
| MEDLINE | ID: mdl-26306092
19.
Conformational States of macromolecular assemblies explored by integrative structure calculation.
Structure
; 21(9): 1500-8, 2013 Sep 03.
Article
in English
| MEDLINE | ID: mdl-24010709
20.
The structure of herpesvirus fusion glycoprotein B-bilayer complex reveals the protein-membrane and lateral protein-protein interaction.
Structure
; 21(8): 1396-405, 2013 Aug 06.
Article
in English
| MEDLINE | ID: mdl-23850455
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